miRBase entry: bta-mir-98

Stem-loop bta-mir-98


Accession
MI0005025
Description
Bos taurus bta-mir-98 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
7 open access papers mention bta-mir-98
(30 sentences)

Sequence

61042 reads, 634 reads per million, 74 experiments
aggacucugcucaugcuggggUGAGGUAGUAAGUUGUAUUGUUgugggguagggauuuuaggccccaauuugaagauaacuauacaacuuacuacuuucccugguguguagcacauuca
..((...((((((((((((((.(((((((((((((((((.((((((((((...........)))))).........)))).))))))))))))))))))))))))))).))))...)).

Structure
ag  cuc    -          U                 U    ---------      aggg 
  ga   ugcu caugcugggg GAGGUAGUAAGUUGUAU GUUg         uggggu    a
  ||   |||| |||||||||| ||||||||||||||||| ||||         ||||||    u
  cu   acga gugugguccc uuucaucauucaacaua caau         accccg    u
-a  uac    u          -                 u    agaaguuua      gauu 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chrX: 97465740-97465858 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-98
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-98

Accession MIMAT0003809
Description Bos taurus bta-miR-98 mature miRNA
Sequence 22 - UGAGGUAGUAAGUUGUAUUGUU - 43
Evidence experimental
cloned [1], Array [2], qRT-PCR [2]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 19170227
    Identification and expression profiling of microRNAs during bovine oocyte maturation using heterologous approach
    "Tesfaye D, Worku D, Rings F, Phatsara C, Tholen E, Schellander K, Hoelker M"
    "Mol Reprod Dev (2009) 76:665-677