miRBase entry: bta-mir-29c

Stem-loop bta-mir-29c


Accession
MI0005044
Description
Bos taurus bta-mir-29c precursor miRNA
Gene family
MIPF0000009; mir-29

Literature search
31 open access papers mention bta-mir-29c
(100 sentences)

Sequence

5485 reads, 719 reads per million, 76 experiments
aucucuuacacaggcugaccgauuucuccugguguucagagucuguuuuugucUAGCACCAUUUGAAAUCGGUUAugauguaggggga
..((((((((((...(((((((((((...(((((((.(((...........))))))))))...))))))))))))).))))))))..

Structure
au        -  ggc           ucc       c   gucu 
  cucuuaca ca   ugaccgauuuc   ugguguu aga    g
  |||||||| ||   |||||||||||   ||||||| |||    u
  ggggaugu gu   AUUGGCUAAAG   ACCACGA Ucu    u
ag        a  ---           UUU       -   guuu 


Annotation confidence Not enough data
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Genome context
chr16: 77733161-77733248 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-29c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-29c

Accession MIMAT0003829
Description Bos taurus bta-miR-29c mature miRNA
Sequence 54 - UAGCACCAUUUGAAAUCGGUUA - 75
Evidence experimental
cloned [1-2]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988