miRBase entry: bta-mir-23b

Stem-loop bta-mir-23b


Accession
MI0005066
Description
Bos taurus bta-mir-23b precursor miRNA
Gene family
MIPF0000027; mir-23

Literature search
16 open access papers mention bta-mir-23b
(37 sentences)

Sequence

82339 reads, 1056 reads per million, 75 experiments
GGGUUCCUGGCAUGCUGAUUUgugacuuaagauuaaaAUCACAUUGCCAGGGAUUACCAC
((((((((((((((.((((((..............)))))))).))))))))))..))..

Structure
--  --          -  C      gugacu 
  GG  GUUCCUGGCA UG UGAUUU      u
  ||  |||||||||| || ||||||       
  CC  UAGGGACCGU AC ACUAaa      a
CA  AU          U  -      auuaga 


Annotation confidence High
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature bta-miR-23b-5p

Accession MIMAT0012538
Description Bos taurus bta-miR-23b-5p mature miRNA
Sequence 1 - GGGUUCCUGGCAUGCUGAUUU - 21
Evidence experimental
Illumina [3]

Mature bta-miR-23b-3p

Accession MIMAT0003852
Description Bos taurus bta-miR-23b-3p mature miRNA
Sequence 38 - AUCACAUUGCCAGGGAUUACCAC - 60
Evidence experimental
cloned [1-2], Illumina [3]

References

  1. PubMed ID: 17105755
    Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues
    "Coutinho LL, Matukumalli LK, Sonstegard TS, Van Tassell CP, Gasbarre LC, Capuco AV, Smith TP"
    "Physiol Genomics (2007) 29:35-43

  2. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988

  3. PubMed ID: 19633723
    Repertoire of bovine miRNA and miRNA-like small regulatory RNAs expressed upon viral infection
    Glazov EA, Kongsuwan K, Assavalapsakul W, Horwood PF, Mitter N, Mahony TJ
    PLoS One (2009) 4:e6349