miRBase entry: mtr-MIR395e

Stem-loop mtr-MIR395e


Accession
MI0005072
Description
Medicago truncatula mtr-MIR395e precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
5 open access papers mention mtr-MIR395e
(12 sentences)

Sequence

gaguuccuuugaacgcuucaugcaugagaauaucuaucuauuugguuuaaaauccauuaggauagauaguucuucuuaaAUGAAGUGUUUGGGGGAACUC
(((((((((((((((((((((....((((((((((((((...(((........)))...)))))))).)))))).....)))))))))))))))))))))

Structure
                     -gcau      -        auu   uuu 
gaguuccuuugaacgcuucau     gagaau aucuaucu   ugg   a
|||||||||||||||||||||     |||||| ||||||||   |||    
CUCAAGGGGGUUUGUGAAGUA     uucuug uagauagg   acc   a
                     aauuc      a        auu   uaa 


Annotation confidence Not enough data
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Genome context
chr5: 16605860-16605959 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mtr-MIR395e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR395e

Accession MIMAT0003858
Description Medicago truncatula mtr-miR395e mature miRNA
Sequence 80 - AUGAAGUGUUUGGGGGAACUC - 100
Evidence not_experimental

References

  1. PubMed ID: 16117853
    Molecular evolution of the rice miR395 gene family
    "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
    "Cell Res (2005) 15:631-638