miRBase entry: mtr-MIR395j

Stem-loop mtr-MIR395j


Accession
MI0005077
Description
Medicago truncatula mtr-MIR395j precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
5 open access papers mention mtr-MIR395j
(12 sentences)

Sequence

gaguuccucugaaugcuucaaacaugagacaaucuauauggauaguucuuguucaAUGAAGUGUUUGGGGGAACUC
((((((((((((((((((((((((.(((.(.((((....)))).)))).))))...))))))))))))))))))))

Structure
                    ---    u   a a    a 
gaguuccucugaaugcuuca   aaca gag c aucu u
||||||||||||||||||||   |||| ||| | ||||  
CUCAAGGGGGUUUGUGAAGU   uugu cuu g uagg a
                    Aac    u   - a    u 


Annotation confidence Not enough data
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Genome context
chr5: 16671143-16671218 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR395j
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR395j

Accession MIMAT0003863
Description Medicago truncatula mtr-miR395j mature miRNA
Sequence 56 - AUGAAGUGUUUGGGGGAACUC - 76
Evidence not_experimental

References

  1. PubMed ID: 16117853
    Molecular evolution of the rice miR395 gene family
    "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
    "Cell Res (2005) 15:631-638