Stem-loop sequence osa-MIR395v

AccessionMI0005090 (change log)
DescriptionOryza sativa miR395v stem-loop
Gene family MIPF0000016; MIR395
Literature search

39 open access papers mention osa-MIR395v
(166 sentences)

     a    cu     c        -    a aauu 
5' ga uucu  uuaag acuucaua cgac c    a
   || ||||  ||||| |||||||| |||| |    u
3' cu aagg  gguuu ugaagugu guug g    u
     c    -c     a        u    g aacu 
Get sequence
Deep sequencing
6 reads, 0 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?

Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the gene names have been rationalised to reflect this arrangement [1].

Genome context
Coordinates (MSU7) Overlapping transcripts
Chr9: 6606575-6606643 [-]
Clustered miRNAs
< 10kb from osa-MIR395v
osa-MIR395tChr9: 6607353-6607495 [-]
osa-MIR395uChr9: 6606701-6606786 [-]
osa-MIR395vChr9: 6606575-6606643 [-]
osa-MIR395wChr9: 6606291-6606359 [-]
Database links

Mature sequence osa-miR395v

Accession MIMAT0003876

49 - 


 - 69

Get sequence
Deep sequencing5 reads, 2 experiments
Evidence by similarity; MI0001007


PMID:16117853 "Molecular evolution of the rice miR395 gene family" Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L Cell Res. 15:631-638(2005).