miRBase entry: ath-MIR771

Stem-loop ath-MIR771


Accession
MI0005101
Description
Arabidopsis thaliana ath-MIR771 precursor miRNA
Gene family
MIPF0001122; MIR771


Sequence

uaaauucgucaUGAGCCUCUGUGGUAGCCCUCAcaaugaucucaauagagugcaugccacgaucuuguaaagacguagaugagggcuccucagguguucaugucgaauguuag
...(((((.(((((((.((((.((.((((((((..(((..(((....)))..)))...(((.((((...)))))))...)))))))))).)))).))))))).))))).....

Structure
--uaa     u       C    U  U        caaugaucucaauagagugcaugcc   a    g 
     auucg caUGAGC UCUG GG AGCCCUCA                         acg ucuu  
     ||||| ||||||| |||| || ||||||||                         ||| |||| u
     uaagc guacuug ggac cc ucgggagu                         ugc agaa  
gauug     u       u    u  -        ----------------------aga   -    a 


Annotation confidence Not enough data
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Genome context
chr3: 19659301-19659413 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR771
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR771

Accession MIMAT0003930
Description Arabidopsis thaliana ath-miR771 mature miRNA
Sequence 12 - UGAGCCUCUGUGGUAGCCCUCA - 33
Evidence experimental
MPSS [1], Northern [1,3], 454 [2-3], cloned [2]

References

  1. PubMed ID: 16954541
    MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
    "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
    "Genome Res (2006) 16:1276-1288

  2. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  3. PubMed ID: 17299599
    High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
    Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
    PLoS One (2007) 2:e219