miRBase entry: ath-MIR777

Stem-loop ath-MIR777


Accession
MI0005107
Description
Arabidopsis thaliana ath-MIR777 precursor miRNA


Sequence

agagagcaacaaaaucaguguguauuuguuaagacaaauguuuauauaagucguccaugcguuguacauuuaaucuuaacuaaUACGCAUUGAGUUUCGUUGCUUucu
(((((((((((((.((((((((((((.(((((((.((((((....((((..(((....)))))))))))))..))))))).)))))))))))).))).))))))))))

Structure
          -   a            u       -c      uuau    gu   c 
agagagcaac aaa ucaguguguauu guuaaga  aaaugu    auaa  cgu c
|||||||||| ||| |||||||||||| |||||||  ||||||    ||||  |||  
ucuUUCGUUG UUU AGUUACGCAUaa caauucu  uuuaca    uguu  gcg a
          C   G            u       aa      ----    --   u 


Annotation confidence Not enough data
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Genome context
chr1: 26638000-26638107 [+]

Database links

Mature ath-miR777

Accession MIMAT0003936
Description Arabidopsis thaliana ath-miR777 mature miRNA
Sequence 84 - UACGCAUUGAGUUUCGUUGCUU - 105
Evidence experimental
MPSS [1], Northern [1], 454 [2-3], cloned [2]

References

  1. PubMed ID: 16954541
    MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
    "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
    "Genome Res (2006) 16:1276-1288

  2. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  3. PubMed ID: 17299599
    High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
    Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
    PLoS One (2007) 2:e219