miRBase entry: ath-MIR778

Stem-loop ath-MIR778


Accession
MI0005108
Description
Arabidopsis thaliana ath-MIR778 precursor miRNA

Literature search
3 open access papers mention ath-MIR778
(11 sentences)

Sequence

ccgccuUGGCUUGGUUUAUGUACACCGaguauguucagcuccauccuauacagauuuugggacaugugccuaggguugagguuucauauauagaaagaacugaacaaacucgguguacauagaccaaaccaaggcggu
(((((((((.((((((((((((((((((((.((((((((((.((((((..((.((........)).))..)))))).))).((((.......))))...))))))).)))))))))))))))))))).))))))))).

Structure
-         C                    a       -------------------   c      ua  g  uuu 
 ccgccuUGG UUGGUUUAUGUACACCGagu uguucag                   cuc auccua  ca au   g
 ||||||||| |||||||||||||||||||| |||||||                   ||| ||||||  || ||    
 ggcggaacc aaccagauacauguggcuca acaaguc                   gag ugggau  gu ua   g
u         a                    a       aagaaagauauauacuuug   u      cc  g  cag 


Annotation confidence Not enough data
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Genome context
chr2: 17349437-17349574 [-]

Database links

Mature ath-miR778

Accession MIMAT0003937
Description Arabidopsis thaliana ath-miR778 mature miRNA
Sequence 7 - UGGCUUGGUUUAUGUACACCG - 27
Evidence experimental
MPSS [1], Northern [1], 454 [2]

References

  1. PubMed ID: 16954541
    MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
    "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
    "Genome Res (2006) 16:1276-1288

  2. PubMed ID: 17299599
    High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
    Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
    PLoS One (2007) 2:e219