miRBase entry: sme-mir-2d

Stem-loop sme-mir-2d


Accession
MI0005135
Description
Schmidtea mediterranea sme-mir-2d precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

gugacauuuugccucuuacgGACAUCAUUAUUUGACUGUCGAUagauauugguaacauuauuuugguaguaUCACAGCCAAAUUUGAUGUCCuaaauaagguagucac
(((((....(((((.(((.((((((((..(((((.((((.....(((((((.(((.......))).))))))))))).))))).)))))))))))...))))))))))

Structure
     auuu     --c   c        UU     A    CGAUa       g   ca 
gugac    ugccu   uua gGACAUCA  AUUUG CUGU     gauauug uaa  u
|||||    |||||   ||| ||||||||  ||||| ||||     ||||||| |||  u
cacug    augga   aau CCUGUAGU  UAAAC GACA     CUaugau guu  a
     ----     aua   -        -U     C    -----       g   uu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Contig1374: 32443-32550 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from sme-mir-2d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sme-miR-2d-5p

Accession MIMAT0012095
Description Schmidtea mediterranea sme-miR-2d-5p mature miRNA
Sequence 21 - GACAUCAUUAUUUGACUGUCGAU - 43
Evidence experimental
Illumina [2-3]

Mature sme-miR-2d-3p

Accession MIMAT0003968
Description Schmidtea mediterranea sme-miR-2d-3p mature miRNA
Sequence 72 - UCACAGCCAAAUUUGAUGUCC - 92
Evidence experimental
cloned [1], Northern [1], 454 [2], Illumina [2]

References

  1. PubMed ID: 16849698
    MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
    "Palakodeti D, Smielewska M, Graveley BR"
    "RNA (2006) 12:1640-1649

  2. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  3. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491