miRBase entry: sme-mir-87b

Stem-loop sme-mir-87b


Accession
MI0005155
Description
Schmidtea mediterranea sme-mir-87b precursor miRNA


Sequence

uucauugaugcguugaugcuUCAUUCGAAAUUUUGCUCAAAUCCauuuugauaauaauaauuuucgaugGUGAGCAAAGCUUCAAAUGAGauuucacggaauucgguc
...(((((..(((.((...((((((.(((.(((((((((...(((((..((.(((....))).)))))))))))))))).))).))))))...)))))....))))).

Structure
uuc     --ug   u  ugc      C   A         AAU     uu  u   a 
   auuga    cgu ga   uUCAUU GAA UUUUGCUCA   CCauu  ga aau a
   |||||    ||| ||   |||||| ||| |||||||||   |||||  || |||  
   uggcu    gca cu   GAGUAA CUU GAAACGAGU   Gguag  cu uua u
--c     uaag   -  uua      A   C         ---     --  u   a 


Annotation confidence Not enough data
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Genome context
Contig17117: 10830-10937 [-]

Database links

Mature sme-miR-87b-5p

Accession MIMAT0012110
Description Schmidtea mediterranea sme-miR-87b-5p mature miRNA
Sequence 21 - UCAUUCGAAAUUUUGCUCAAAUCC - 44
Evidence experimental
454 [2], Illumina [2-3]

Mature sme-miR-87b-3p

Accession MIMAT0003990
Description Schmidtea mediterranea sme-miR-87b-3p mature miRNA
Sequence 70 - GUGAGCAAAGCUUCAAAUGAG - 90
Evidence experimental
cloned [1], 454 [2], Illumina [2-3]

References

  1. PubMed ID: 16849698
    MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
    "Palakodeti D, Smielewska M, Graveley BR"
    "RNA (2006) 12:1640-1649

  2. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  3. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491