miRBase entry: sme-mir-747

Stem-loop sme-mir-747


Accession
MI0005166
Description
Schmidtea mediterranea sme-mir-747 precursor miRNA


Sequence

ucaguucuguucaUAAUCUCAUCUGGUAAUUGAAGUgaucuauuuuuuaaaaaaagaaaCUUCAUUAUCAUUUCAGAUUGUAaucgaaauga
(((.(((.(((.(((((((.(..(((((((.(((((..(((.((((...)))).))).))))))))))))..).)))))))))).))).)))

Structure
   g   u   c       C UC       U     ga   a    u 
uca uuc guu aUAAUCU A  UGGUAAU GAAGU  ucu uuuu  
||| ||| ||| ||||||| |  ||||||| |||||  ||| |||| u
agu aag uaA UGUUAGA U  ACUAUUA CUUCa  aga aaaa  
   a   c   -       C UU       -     -a   a    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Contig1616: 21999-22090 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sme-mir-747
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sme-miR-747-5p

Accession MIMAT0004005
Description Schmidtea mediterranea sme-miR-747-5p mature miRNA
Sequence 14 - UAAUCUCAUCUGGUAAUUGAAGU - 36
Evidence experimental
cloned [1], 454 [2], Illumina [2-3]

Mature sme-miR-747-3p

Accession MIMAT0012117
Description Schmidtea mediterranea sme-miR-747-3p mature miRNA
Sequence 60 - CUUCAUUAUCAUUUCAGAUUGUA - 82
Evidence experimental
454 [2], Illumina [2-3]

References

  1. PubMed ID: 16849698
    MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
    "Palakodeti D, Smielewska M, Graveley BR"
    "RNA (2006) 12:1640-1649

  2. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  3. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491