miRBase entry: sme-mir-219

Stem-loop sme-mir-219


Accession
MI0005167
Description
Schmidtea mediterranea sme-mir-219 precursor miRNA


Sequence

cgguaauuuauugcUGAUUGUCCAUACGCAGUUCUCAaggucuagaaucgacgaauugccguuuAAGAAUUGCGAAUGGUCAUCAacaauaauugcug
((((((((.((((.((((.(.((((.(((((((((...(((................))).....))))))))).)))).))))).))))))))))))

Structure
        u    c    U U    A         --CAa   cuagaau 
cgguaauu auug UGAU G CCAU CGCAGUUCU     ggu       c
|||||||| |||| |||| | |||| |||||||||     |||        
gucguuaa uaac ACUA C GGUA GCGUUAAGA     ccg       g
        -    a    - U    A         Auuug   uuaagca 


Annotation confidence Not enough data
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Genome context
Contig383: 20071-20168 [+]

Database links

Mature sme-miR-219-5p

Accession MIMAT0004006
Description Schmidtea mediterranea sme-miR-219-5p mature miRNA
Sequence 15 - UGAUUGUCCAUACGCAGUUCUCA - 37
Evidence experimental
cloned [1], 454 [2], Illumina [2-3]

Mature sme-miR-219-3p

Accession MIMAT0012118
Description Schmidtea mediterranea sme-miR-219-3p mature miRNA
Sequence 65 - AAGAAUUGCGAAUGGUCAUCA - 85
Evidence experimental
454 [2], Illumina [2-3]

References

  1. PubMed ID: 16849698
    MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
    "Palakodeti D, Smielewska M, Graveley BR"
    "RNA (2006) 12:1640-1649

  2. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  3. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491