miRBase entry: sme-mir-750

Stem-loop sme-mir-750


Accession
MI0005176
Description
Schmidtea mediterranea sme-mir-750 precursor miRNA

Literature search
1 open access papers mention sme-mir-750
(1 sentences)

Sequence

auugaaaucagauuuucaGCACUGGAAGGUUUGGUUUAGCUgcugugcaccgucaugucgacacagUCAGAUCUAACUCUUCCAGUUCUaaagcugauagcgaac
.(((..(((((.((((.((.(((((((((((.(((((.((((.(((..((......))..))))))).))))).))).)))))))).)))))))))))..)))..

Structure
-a   aa     a    c  C        -   U     A    c   gc  cg 
  uug  aucag uuuu aG ACUGGAAG GUU GGUUU GCUg ugu  ac  u
  |||  ||||| |||| || |||||||| ||| ||||| |||| |||  ||   
  agc  uaguc gaaa UC UGACCUUC CAA CUAGA Ugac aca  ug  c
ca   ga     -    -  U        U   U     C    -   gc  ua 


Annotation confidence Not enough data
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Genome context
Contig1078: 22657-22761 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from sme-mir-750
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sme-miR-750-5p

Accession MIMAT0012124
Description Schmidtea mediterranea sme-miR-750-5p mature miRNA
Sequence 19 - GCACUGGAAGGUUUGGUUUAGCU - 41
Evidence experimental
454 [2], Illumina [2-3]

Mature sme-miR-750-3p

Accession MIMAT0004017
Description Schmidtea mediterranea sme-miR-750-3p mature miRNA
Sequence 67 - UCAGAUCUAACUCUUCCAGUUCU - 89
Evidence experimental
cloned [1], Northern [1], 454 [2], Illumina [2]

References

  1. PubMed ID: 16849698
    MicroRNAs from the Planarian Schmidtea mediterranea: a model system for stem cell biology
    "Palakodeti D, Smielewska M, Graveley BR"
    "RNA (2006) 12:1640-1649

  2. PubMed ID: 19564616
    High-resolution profiling and discovery of planarian small RNAs
    "Friedlander MR, Adamidi C, Han T, Lebedeva S, Isenbarger TA, Hirst M, Marra M, Nusbaum C, Lee WL, Jenkin JC, Sanchez Alvarado A, Kim JK, Rajewsky N"
    "Proc Natl Acad Sci U S A (2009) 106:11546-11551

  3. PubMed ID: 19553344
    Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea
    "Lu YC, Smielewska M, Palakodeti D, Lovci MT, Aigner S, Yeo GW, Graveley BR"
    "RNA (2009) 15:1483-1491