miRBase entry: cel-mir-786

Stem-loop cel-mir-786


Accession
MI0005186
Description
Caenorhabditis elegans cel-mir-786 precursor miRNA
Gene family
MIPF0000363; mir-786

Literature search
3 open access papers mention cel-mir-786
(7 sentences)

Sequence

23949 reads, 300 reads per million, 13 experiments
gggauaguucccgauCGAAUAUCAGUUGGGGUAUUUACAaaaagacaaaauugUAAUGCCCUGAAUGAUGUUCAAUcggugaugaaucuc
(((((...(((((((.((((((((.((((((((((.((((..........)))))))))))))).)))))))).))))).))...)))))

Structure
     agu  -     C        G          U    aaag 
gggau   uc ccgau GAAUAUCA UUGGGGUAUU ACAa    a
|||||   || ||||| |||||||| |||||||||| ||||     
cucua   ag ggcUA CUUGUAGU AGUCCCGUAA Uguu    c
     agu  u     A        A          -    aaaa 


Annotation confidence High
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Genome context
chrX: 7882751-7882840 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cel-mir-786
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cel-miR-786-5p

Accession MIMAT0015239
Description Caenorhabditis elegans cel-miR-786-5p mature miRNA
Sequence 16 - CGAAUAUCAGUUGGGGUAUUUACA - 39
Evidence experimental
CLIPseq [3]
Database links

Mature cel-miR-786-3p

Accession MIMAT0004221
Description Caenorhabditis elegans cel-miR-786-3p mature miRNA
Sequence 54 - UAAUGCCCUGAAUGAUGUUCAAU - 76
Evidence experimental
454 [1], Illumina [2], CLIPseq [3]
Database links
Predicted targets

References

  1. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207

  2. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  3. PubMed ID: 20062054
    Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
    "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
    "Nat Struct Mol Biol (2010) 17:173-179