Stem-loop osa-MIR815a

Accession

MI0005242

Description

Oryza sativa osa-MIR815a precursor miRNA

Gene family

MIPF0000349; MIR815

Literature search

1 open access papers mention osa-MIR815a
(1 sentences)

Sequence

549 reads, 427 reads per million, 2 experiments

uuuuuuuagacucuuaauuucuuuuucuaggaugaacucuuaggguguguuugaggagAAGGGGAUUGAGGAGAUUGGGgaga
(((((((((.((((((((((((((((((.((((..((((...))))..))))..))))))))))))))).))).)))))))))

Structure

         a   -               -a    ga    u 
uuuuuuuag cuc uuaauuucuuuuucu  ggau  acuc  
||||||||| ||| |||||||||||||||  ||||  |||| u
agagGGGUU GAG AGUUAGGGGAAgagg  uuug  uggg  
         A   G               ag    ug    a 

Annotation confidence Not enough data

Comments

miR815 was misnamed miR574 by Luo et al [1]. The identified mature sequence maps many times to the rice genome, and overlaps annotated transposon and siRNA loci. This entry may therefore represent an siRNA rather than a miRNA, and may be removed from future database releases.

Genome context

Chr5: 29746632-29746714 [+]

Mature osa-miR815a

• Accession: MIMAT0004058
• Description: Oryza sativa osa-miR815a mature miRNA
• Sequence: 59 - AAGGGGAUUGAGGAGAUUGGG - 79
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116