miRBase entry: osa-MIR818a

Stem-loop osa-MIR818a


Accession
MI0005247
Description
Oryza sativa osa-MIR818a precursor miRNA
Gene family
MIPF0000344; MIR818

Literature search
10 open access papers mention osa-MIR818a
(20 sentences)

Sequence

233 reads, 104 reads per million, 2 experiments
ucccuccaucccauaguauaagggauuugggaaugaugugacauauccuaguauaaugaaucuggacaaaccgucuguccaaauucauuguccuaguaugugucacaucuacucaaAAUCCCUUAUAUUAUGGGACGGaaggga
(((((((.(((((((((((((((((((((((...((((((((((((.((((.(((((((((.((((((.......)))))).))))))))).)))).))))))))))))..))).)))))))))))))))))))).)).)))))

Structure
     -  a                    -   aau            c    u         c      aa 
ucccu cc ucccauaguauaagggauuu ggg   gaugugacauau cuag auaaugaau uggaca  c
||||| || |||||||||||||||||||| |||   |||||||||||| |||| ||||||||| ||||||  c
aggga GG AGGGUAUUAUAUUCCCUAAa cuc   cuacacugugua gauc uguuacuua accugu  g
     a  C                    a   -au            u    c         a      cu 


Annotation confidence Low
Do you think this miRNA is real?
Comments
miR818 was misnamed miR580 by Luo et al [1].

Genome context
Chr1: 40415422-40415565 [+]

Database links

Mature osa-miR818a

Accession MIMAT0004063
Description Oryza sativa osa-miR818a mature miRNA
Sequence 117 - AAUCCCUUAUAUUAUGGGACGG - 138
Evidence experimental
cloned [1], Northern [1]
Database links

References

  1. PubMed ID: 16959252
    Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
    "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
    "FEBS Lett (2006) 580:5111-5116