Stem-loop osa-MIR818c

Accession

MI0005249

Description

Oryza sativa osa-MIR818c precursor miRNA

Literature search

11 open access papers mention osa-MIR818c
(28 sentences)

Sequence

48163 reads, 174.0 reads per million, 142 experiments

auaauauacucauuucguCCUAUAAUAUAAGGGAUUUUGaagggaugugacacauccuagcuauaaccauauaucuagacauagcuaggaacauauaucuagacaugcucuugucuagauauauguguuauaucucuccaaAAUCCCUUAUAUUAUGGGACGGAugaauauguuau
((((((((.(((((.((((((((((((((((((((((((.(((((((((((...((((((((((................))))))))))(((((((((((((((......)))))))))))))))))))))))))).))))))))))))))))))))))))))))).))))))))

Structure

        c     u                        a           acauccuagcuauaaccauauaucuagacauagcuagga               ug 
auaauaua ucauu cguCCUAUAAUAUAAGGGAUUUUG agggaugugac                                       acauauaucuagaca  c
|||||||| ||||| |||||||||||||||||||||||| |||||||||||                                       |||||||||||||||   
uauuguau aguAG GCAGGGUAUUAUAUUCCCUAAaac ucucuauauug                                       uguauauagaucugu  u
        a     -                        c           ---------------------------------------               uc 

Annotation confidence Medium

Comments

miR818 was misnamed miR580 by Luo et al [1].

Genome context

2: 35928738-35928913 [+]

Mature osa-miR818c-5p

• Accession: MIMAT0056015
• Description: Oryza sativa osa-miR818c-5p mature miRNA
• Sequence: 19 - CCUAUAAUAUAAGGGAUUUUG - 39
• Evidence: experimental ; unknown

Mature osa-miR818c-3p

• Accession: MIMAT0004065
• Description: Oryza sativa osa-miR818c-3p mature miRNA
• Sequence: 142 - AAUCCCUUAUAUUAUGGGACGGA - 164
• Evidence: experimental ; cloned [1], Northern [1]

References

1. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116