miRBase entry: osa-MIR820a

Stem-loop osa-MIR820a


Accession
MI0005263
Description
Oryza sativa osa-MIR820a precursor miRNA
Gene family
MIPF0000348; MIR820

Literature search
14 open access papers mention osa-MIR820a
(228 sentences)

Sequence

2189 reads, 1532 reads per million, 2 experiments
ugcgUCGGCCUCGUGGAUGGACCAGgagcucaacauuccuuaagguuguucuuucaaacccauacaagguuccaccgccugcauuguuccaagagugucuuggaugaaaguaggaaguggaaccuuguuaggguuggaacgaacugccuuaaggaagucgaugcuccagguccguccaggaggacgacuca
((.((((.((((.((((((((((.(((((((.((.(((((((((((.((((.(((.(((((..((((((((((((..(((((.((..(((((((...)))))))..)).)))))..))))))))))))..))))).))).)))).))))))))))))).)).))))).)))))))))).)))).)))).))

Structure
  c    G    G          A     -  a  a           u    u   a     au            cg     a  gu       g 
ug gUCG CCUC UGGAUGGACC Ggagc uc ac uuccuuaaggu guuc uuc aaccc  acaagguuccac  ccugc uu  uccaaga  
|| |||| |||| |||||||||| ||||| || || ||||||||||| |||| ||| |||||  ||||||||||||  ||||| ||  ||||||| u
ac cagc ggag accugccugg ccucg ag ug aaggaauuccg caag aag uuggg  uguuccaaggug  ggaug aa  agguucu  
  u    a    g          a     u  c  -           u    c   g     au            aa     a  gu       g 


Annotation confidence Not enough data
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Comments
miR820 was misnamed miR583 by Luo et al [1].

Genome context
Chr1: 14130479-14130669 [+]

Database links

Mature osa-miR820a

Accession MIMAT0004079
Description Oryza sativa osa-miR820a mature miRNA
Sequence 5 - UCGGCCUCGUGGAUGGACCAG - 25
Evidence experimental
cloned [1], Northern [1-2], MPSS [2], Illumina [3]
Database links

References

  1. PubMed ID: 19903869
    Rice MicroRNA effector complexes and targets
    "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
    "Plant Cell (2009) 21:3421-3435

  2. PubMed ID: 18353984
    Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
    "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
    "Proc Natl Acad Sci U S A (2008) 105:4951-4956

  3. PubMed ID: 16959252
    Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
    "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
    "FEBS Lett (2006) 580:5111-5116