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miRBase |
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Stem-loop sequence osa-MIR820c |
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Accession | MI0005265 (change log) | ||||
Description | Oryza sativa miR820c stem-loop | ||||
Gene family | MIPF0000348; MIR820 | ||||
Literature search |
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14 open access papers mention osa-MIR820c | ||||
Stem-loop |
u g a - a c u cau g -a u a 5' gcgucg ccucguggauggacc ggagc ucgac uuccuuaaggu guuc uuccgacc acaagguuccgcu ccugc uugu ccaag g |||||| ||||||||||||||| ||||| ||||| ||||||||||| |||| |||||||| ||||||||||||| ||||| |||| ||||| u 3' cgcagc ggagcaccugccugg ccucg agcug aaggaauuccg caag aaggcugg uguuccaagguga ggacg aaca gguuc g a a a u - u c aau a aa - u |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Comments |
miR820 was misnamed miR583 by Luo et al [1]. |
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Genome context |
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Database links |
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Mature sequence osa-miR820c |
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Accession | MIMAT0004081 |
Sequence |
5 - ucggccucguggauggaccag - 25 |
Deep sequencing | 2373 reads, 2 experiments |
Evidence | experimental; cloned [1], Northern [1-2], MPSS [2], Illumina [3] |
Database links |
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References |
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1 |
PMID:16959252
"Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development"
FEBS Lett. 580:5111-5116(2006).
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2 |
PMID:18353984
"Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)"
Proc Natl Acad Sci U S A. 105:4951-4956(2008).
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3 |
PMID:19903869
"Rice MicroRNA effector complexes and targets"
Plant Cell. 21:3421-3435(2009).
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