Stem-loop osa-MIR820c

Accession

MI0005265

Description

Oryza sativa osa-MIR820c precursor miRNA

Gene family

MIPF0000348; MIR820

Literature search

14 open access papers mention osa-MIR820c
(222 sentences)

Sequence

2328 reads, 1655 reads per million, 2 experiments

ugcgUCGGCCUCGUGGAUGGACCAGgagcucgacauuccuuaaggucguucuuuccgacccauacaagguuccgcugccugcauuguuccaagagugucuuggacaaaagcaggaaguggaaccuuguuaaggucggaacgaacugccuuaaggaagucgaugcuccagguccguccacgaggacgacgca
(((((((.(((((((((((((((.((((((((((.(((((((((((.((((.((((((((...(((((((((((((.(((((.((((.((((((...))))))))))..))))).)))))))))))))...)))))))).)))).)))))))))))))))).))))).))))))))))))))).)))))))

Structure

       G               A     -     a           c    u        cau             g     -a    u      g 
ugcgUCG CCUCGUGGAUGGACC Ggagc ucgac uuccuuaaggu guuc uuccgacc   acaagguuccgcu ccugc  uugu ccaaga  
||||||| ||||||||||||||| ||||| ||||| ||||||||||| |||| ||||||||   ||||||||||||| |||||  |||| |||||| u
acgcagc ggagcaccugccugg ccucg agcug aaggaauuccg caag aaggcugg   uguuccaagguga ggacg  aaca gguucu  
       a               a     u     -           u    c        aau             a     aa    -      g 

Annotation confidence Not enough data

Comments

miR820 was misnamed miR583 by Luo et al [1].

Genome context

Chr10: 6928681-6928871 [+]

Mature osa-miR820c

• Accession: MIMAT0004081
• Description: Oryza sativa osa-miR820c mature miRNA
• Sequence: 5 - UCGGCCUCGUGGAUGGACCAG - 25
• Evidence: experimental ; cloned [1], Northern [1-2], MPSS [2], Illumina [3]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435


2. PubMed ID: 18353984
   Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
   "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
   "Proc Natl Acad Sci U S A (2008) 105:4951-4956


3. PubMed ID: 16959252
   Rice embryogenic calli express a unique set of microRNAs, suggesting regulatory roles of microRNAs in plant post-embryogenic development
   "Luo YC, Zhou H, Li Y, Chen JY, Yang JH, Chen YQ, Qu LH"
   "FEBS Lett (2006) 580:5111-5116