miRBase entry: mdo-mir-124a-2

Stem-loop mdo-mir-124a-2


Accession
MI0005289
Description
Monodelphis domestica mdo-mir-124a-2 precursor miRNA
Gene family
MIPF0000021; mir-124


Sequence

141588 reads, 3546 reads per million, 4 experiments
aucagagacucugucucuccGUGUUCACAGCGGACCUUGAUuuaaugucauacaaUUAAGGCACGCGGUGAAUGCCAagagcggagccugaaa
.((((.(.(((((.((((..((((((((.(((..((((((((...........))))))))..))).))))))))..))))))))))))))..

Structure
-a    a a     u    cc        A   GA        uaau 
  ucag g cucug cucu  GUGUUCAC GCG  CCUUGAUu    g
  |||| | ||||| ||||  |||||||| |||  ||||||||    u
  aguc c gaggc gaga  CGUAAGUG CGC  GGAAUUaa    c
aa    - -     -    AC        G   AC        caua 


Annotation confidence High
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Genome context
chr3: 173742224-173742316 [-]

Database links

Mature mdo-miR-124a-3p

Accession MIMAT0004102
Description Monodelphis domestica mdo-miR-124a-3p mature miRNA
Sequence 56 - UUAAGGCACGCGGUGAAUGCCA - 77
Evidence experimental
Microarray [1], PCR [1], Illumina [2]
Database links
Predicted targets

Mature mdo-miR-124a-5p

Accession MIMAT0026660
Description Monodelphis domestica mdo-miR-124a-5p mature miRNA
Sequence 21 - GUGUUCACAGCGGACCUUGAU - 41
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45