miRBase entry: mdo-mir-135b

Stem-loop mdo-mir-135b


Accession
MI0005298
Description
Monodelphis domestica mdo-mir-135b precursor miRNA
Gene family
MIPF0000028; mir-135


Sequence

706 reads, 15 reads per million, 5 experiments
agcucucugcuguggccUAUGGCUUUUCAUUCCUAUGUGauugcuguucccaacucAUGUAGGGCUAAAAGCCAUGGGcuacagggaggggagagccucc
.(((((((.((((((((((((((((((...(((((((((((((.......))).))))))))))..))))))))))))))))....)).)))))))....

Structure
---a       g  ----                CAU          -   cu 
    gcucucu cu    guggccUAUGGCUUUU   UCCUAUGUGa uug  g
    ||||||| ||    ||||||||||||||||   |||||||||| |||  u
    cgagagg ga    caucGGGUACCGAAAA   GGGAUGUAcu aac  u
ccuc       g  ggga                -UC          c   cc 


Annotation confidence High
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Genome context
chr2: 111348471-111348570 [-]

Database links

Mature mdo-miR-135b-5p

Accession MIMAT0004109
Description Monodelphis domestica mdo-miR-135b-5p mature miRNA
Sequence 18 - UAUGGCUUUUCAUUCCUAUGUG - 39
Evidence experimental
Illumina [2]

Mature mdo-miR-135b-3p

Accession MIMAT0026667
Description Monodelphis domestica mdo-miR-135b-3p mature miRNA
Sequence 57 - AUGUAGGGCUAAAAGCCAUGGG - 78
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45