miRBase entry: mdo-mir-144

Stem-loop mdo-mir-144


Accession
MI0005303
Description
Monodelphis domestica mdo-mir-144 precursor miRNA
Gene family
MIPF0000093; mir-144


Sequence

50022 reads, 741 reads per million, 5 experiments
cggggcccaggccgGGAUAUCAUCGUAUACUGUAAGUuugcaaugagacacUACAGUAUAGAUGAUGUACUGGcgagggccgccu
.(((((((..(((((.((((((((.(((((((((.((((......))))..))))))))))))))))).)))))..))))).)).

Structure
c  -     ag     G        G         -A    gc 
 gg ggccc  gccgG AUAUCAUC UAUACUGUA  GUuu  a
 || |||||  ||||| |||||||| |||||||||  ||||   
 cc ccggg  cGGUC UGUAGUAG AUAUGACAU  caga  a
u  g     ag     A        -         ca    gu 


Annotation confidence High
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Genome context
chr2: 506777490-506777574 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-144
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-144-3p

Accession MIMAT0004114
Description Monodelphis domestica mdo-miR-144-3p mature miRNA
Sequence 52 - UACAGUAUAGAUGAUGUACUGG - 73
Evidence experimental
Illumina [2]

Mature mdo-miR-144-5p

Accession MIMAT0026669
Description Monodelphis domestica mdo-miR-144-5p mature miRNA
Sequence 15 - GGAUAUCAUCGUAUACUGUAAGU - 37
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45