miRBase entry: mdo-mir-29a-1

Stem-loop mdo-mir-29a-1


Accession
MI0005353
Description
Monodelphis domestica mdo-mir-29a-1 precursor miRNA
Gene family
MIPF0000009; mir-29


Sequence

34153 reads, 555 reads per million, 5 experiments
augaCUGAUUUCUUUUGGUGUUCAGAgucaauaucauuuucUAGCACCAUUUGAAAUCGGUUau
((((((((((((...(((((((.((((...........)))))))))))...))))))))))))

Structure
            UUU       C    ucaa 
augaCUGAUUUC   UGGUGUU AGAg    u
||||||||||||   ||||||| ||||    a
uaUUGGCUAAAG   ACCACGA Ucuu    u
            UUU       -    uuac 


Annotation confidence High
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Genome context
chr8: 190600409-190600472 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-29a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-29a-3p

Accession MIMAT0004164
Description Monodelphis domestica mdo-miR-29a-3p mature miRNA
Sequence 42 - UAGCACCAUUUGAAAUCGGUU - 62
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature mdo-miR-29a-1-5p

Accession MIMAT0026704
Description Monodelphis domestica mdo-miR-29a-1-5p mature miRNA
Sequence 5 - CUGAUUUCUUUUGGUGUUCAGA - 26
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45