miRBase entry: mdo-mir-18a

Stem-loop mdo-mir-18a


Accession
MI0005355
Description
Monodelphis domestica mdo-mir-18a precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

2638 reads, 60 reads per million, 5 experiments
uuguucUAAGGUGCAUCUAGUGCAGAUAgugaaguagauuagcaucuACUGCCCUAAGUGCUCCUUCUGGCa
.((((..((((.((((.(((.((((.(((((..(.....)..)).))))))).))).)))).))))..))))

Structure
u    cU    U    C   U    A   -  aa u 
 uguu  AAGG GCAU UAG GCAG UAg ug  g a
 ||||  |||| |||| ||| |||| ||| ||  | g
 aCGG  UUCC CGUG AUC CGUC Auc ac  u a
-    UC    U    A   C    -   u  ga u 


Annotation confidence High
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Genome context
chr7: 108468760-108468831 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from mdo-mir-18a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-18a-5p

Accession MIMAT0004167
Description Monodelphis domestica mdo-miR-18a-5p mature miRNA
Sequence 7 - UAAGGUGCAUCUAGUGCAGAUA - 28
Evidence experimental
Illumina [2]

Mature mdo-miR-18a-3p

Accession MIMAT0026705
Description Monodelphis domestica mdo-miR-18a-3p mature miRNA
Sequence 48 - ACUGCCCUAAGUGCUCCUUCUGGC - 71
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45