miRBase entry: ath-MIR823

Stem-loop ath-MIR823


Accession
MI0005380
Description
Arabidopsis thaliana ath-MIR823 precursor miRNA
Gene family
MIPF0001135; MIR823

Literature search
2 open access papers mention ath-MIR823
(3 sentences)

Sequence

aauuucagagauacuaauccaagagauggcggauacguuuuacaaucacgaaucuuguaugaucacuaaccauuggaacaauaagaguauauaaugaguauaucaccauuuaguucuagUGGGUGGUGAUCAUAUAAGAUugguaaugguaacagugaaacauaucccccaucuauugggauuaauuaguc
..............((((((...((((((.(((((.(((((((.(((((.(((((((((((((((((..((((((((((((.....((((((.....))))))......)).))))))))))..))))))))))))))))).))...)))....))))))).))))).))))))....)))))).......

Structure
aauuucagagauac      -aag      c     c       ---a   ---  g                 aa          -  -uaaga      a 
              uaaucc    agaugg ggaua guuuuac    auc   ac aaucuuguaugaucacu  ccauuggaac aa      guauau a
              ||||||    |||||| ||||| |||||||    |||   || |||||||||||||||||  |||||||||| ||      |||||| u
              auuagg    ucuacc ccuau caaagug    ugg   ug uUAGAAUAUACUAGUGG  GGUgaucuug uu      uauaug g
-------cugauua      guua      c     a       acaa   uaa  g                 UG          a  uaccac      a 


Annotation confidence Not enough data
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Genome context
chr3: 4496775-4496965 [-]

Database links

Mature ath-miR823

Accession MIMAT0004240
Description Arabidopsis thaliana ath-miR823 mature miRNA
Sequence 120 - UGGGUGGUGAUCAUAUAAGAU - 140
Evidence experimental
454 [1-2], Northern [1], cloned [2], Illumina [3]

References

  1. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  2. PubMed ID: 19815687
    Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
    "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
    "J Exp Bot (2010) 61:165-177

  3. PubMed ID: 17299599
    High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
    Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
    PLoS One (2007) 2:e219