miRBase entry: ath-MIR826a

Stem-loop ath-MIR826a


Accession
MI0005382
Description
Arabidopsis thaliana ath-MIR826a precursor miRNA

Literature search
3 open access papers mention ath-MIR826a
(21 sentences)

Sequence

agagacguggaugcuucucguccacaaguucuuuggugccucuaugauaUAGUCCGGUUUUGGAUACGUGaaaaucauaucauauugcugcugugaaaaguuaauuuucacguguccaaaaccagauuaucucauauugcugcuguguaucuuaucaucuuuuuccugcuacucuuac
((((..(((((((.....)))))))(((.....((((((...(((((.((((((.((((((((((((((((((((((((.((......)).)))))........))))))))))))))))))).)))))).)))))..)).)))).....)))..................))))...

Structure
---    acguggaugcuucucguccac   uucuu    -  cuc     u      C                   --------     u  ua 
   agag                     aag     uggu gc   uauga aUAGUC GGUUUUGGAUACGUGaaaa        ucaua ca  u
   ||||                     |||     |||| ||   ||||| |||||| |||||||||||||||||||        ||||| ||   
   ucuc                     uuc     gucg cg   auacu uauuag ccaaaaccugugcacuuuu        agugu gu  u
cau    ---aucguccuuuuucuacua   uaugu    u  -uu     c      a                   aauugaaa     c  cg 


Annotation confidence Not enough data
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Genome context
chr4: 1340479-1340656 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR826a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR826a

Accession MIMAT0004242
Description Arabidopsis thaliana ath-miR826a mature miRNA
Sequence 50 - UAGUCCGGUUUUGGAUACGUG - 70
Evidence experimental
454 [1]

References

  1. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425