Stem-loop ath-MIR828

Accession

MI0005384

Description

Arabidopsis thaliana ath-MIR828 precursor miRNA

Gene family

MIPF0000544; MIR828

Literature search

9 open access papers mention ath-MIR828
(30 sentences)

Sequence

gugacaaagucacaaaagugauaaacucuccuuuccacuuucuaauguuUCUUGCUUAAAUGAGUAUUCCAuguaaaaaugauucacucacucguauggguggguuggguuuucucuucaugagaugcucauuugagcaagcaauguuuggaagugggacuauuuaauaucauguaugaguuuuaucuuuu
(((((...)))))(((((....((((((....((((((((((.((((((.((((((((((((((((((.((((.......(((((((((((((....))))))).)))))).......)))).)))))))))))))))))).)))))).))))))))))..................))))))...)))))

Structure

gugacaaagucac     ugau      --------------uccu          u      U                  C    uaaaaau      -       g 
             aaaag    aaacuc                  uuccacuuuc aauguu CUUGCUUAAAUGAGUAUU CAug       gauuca cucacuc u
             |||||    ||||||                  |||||||||| |||||| |||||||||||||||||| ||||       |||||| |||||||  
             uuuuc    uuugag                  agggugaagg uuguaa gaacgaguuuacucguag guac       uugggu ggguggg a
-------------     -uau      uauguacuauaauuuauc          u      c                  a    uucucuu      u       u 

Annotation confidence Not enough data

Genome context

chr4: 13846971-13847161 [+]

Mature ath-miR828

• Accession: MIMAT0004244
• Description: Arabidopsis thaliana ath-miR828 mature miRNA
• Sequence: 50 - UCUUGCUUAAAUGAGUAUUCCA - 71
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425