miRBase entry: ath-MIR837

Stem-loop ath-MIR837


Accession
MI0005393
Description
Arabidopsis thaliana ath-MIR837 precursor miRNA
Gene family
MIPF0001155; MIR837

Literature search
2 open access papers mention ath-MIR837
(3 sentences)

Sequence

uuuuugauaaauacuuuuguuugcuuacaaguauaaagucaucauguuuuuuucAUCAGUUUCUUGUUCGUUUCAaaauuaugauuuuuguuuacuuacacucauaaucuugAAACGAACAAAAAACUGAUGGaaaaacaugaggacuuuauacuuguaaauaaauaaaaauauuuauuagaaa
.((((((((((((.(((((((((.((((((((((((((((.(((((((((((.(((((((((.(((((((((((((.(((((((....(((......))).))))))).))))))))))))).)))))))))))))))))))).)))))))))))))))).))))))))).)))))))))))).

Structure
u            c         c                a           u         C             a       uuuu   uu 
 uuuugauaaaua uuuuguuug uuacaaguauaaaguc ucauguuuuuu cAUCAGUUU UUGUUCGUUUCAa auuauga    ugu  a
 |||||||||||| ||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |||||||    |||   
 aagauuauuuau aaaauaaau aauguucauauuucag aguacaaaaaG GUAGUCAAA AACAAGCAAAguu uaauacu    aca  c
a            a         a                g           -         A             c       ---c   uu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 6520941-6521124 [+]

Database links

Mature ath-miR837-5p

Accession MIMAT0004258
Description Arabidopsis thaliana ath-miR837-5p mature miRNA
Sequence 55 - AUCAGUUUCUUGUUCGUUUCA - 75
Evidence experimental
454 [1], Illumina [2]

Mature ath-miR837-3p

Accession MIMAT0004259
Description Arabidopsis thaliana ath-miR837-3p mature miRNA
Sequence 113 - AAACGAACAAAAAACUGAUGG - 133
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  2. PubMed ID: 19815687
    Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
    "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
    "J Exp Bot (2010) 61:165-177