Stem-loop ath-MIR838

Accession

MI0005394

Description

Arabidopsis thaliana ath-MIR838 precursor miRNA

Gene family

MIPF0001184; MIR838

Literature search

3 open access papers mention ath-MIR838
(12 sentences)

Sequence

uacuuuucuaauaucacgaggacuuacauggccucaagucaccugugguguugugcaagaaggagaagcaaagucugucuauguauuaugagauagcuacuucuauggcuaggauauauguuguacaagaccggcUUUUCUUCUACUUCUUGCACAaccugagguuauugaggcuauacaagucuucuucuauaauguuauuuauua
.................((((((((..((((((((((...((((..((.(((((((((((((.(((((.((((((.((((.(((((((((...((((((......))))))...))))....))))))))).)))))).))))).))))))))))))))).))))..))))))))))..))))))))....................

Structure

---uacuuuucuaauaucac        ac          guc    gu  u             g     c      u    a     ----    aga      cu 
                    gaggacuu  auggccucaa   accu  gg guugugcaagaag agaag aaaguc gucu uguau    uaug   uagcua  u
                    ||||||||  ||||||||||   ||||  || ||||||||||||| ||||| |||||| |||| |||||    ||||   ||||||   
                    cuucugaa  uaucggaguu   ugga  uc caACACGUUCUUC UCUUC UUUcgg caga acaug    auau   aucggu  c
auuauuuauuguaauaucuu        ca          -au    -g  -             A     U      c    -     uugu    agg      au 

Annotation confidence Not enough data

Genome context

chr1: 28500-28706 [+]

Mature ath-miR838

• Accession: MIMAT0004260
• Description: Arabidopsis thaliana ath-miR838 mature miRNA
• Sequence: 136 - UUUUCUUCUACUUCUUGCACA - 156
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


2. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177