Stem-loop ath-MIR839

Accession

MI0005395

Description

Arabidopsis thaliana ath-MIR839 precursor miRNA

Gene family

MIPF0001143; MIR839

Literature search

2 open access papers mention ath-MIR839
(3 sentences)

Sequence

cucacucaugugagcagaaagaguagcaugauauuuucuucaaggucuuUACCAACCUUUCAUCGUUCCCuucuuugcaauaacgcuguuuugcaaaaccgugauagugcugagccgaugagccucuaaugaaauuauagacucaucggcucaggaccauugcgguugugcaaaacgguguuauugcugagaagggaacgcaugagagguugguaaagaccucaauggaaucuuaugguacucuuuuugcucacaugagugagu
(((((((((((((((((((((((((.(((((....((((...(((((((((((((((((((((((((((((((((.(((((((((((((((((((.(((((((((.((.(((((((((((((.((.((((...)))).)).))))))))))))).)).))))))))).))))))))))))))))))).)))))))))))).)))))))))))))))))))))....))))..))))).))))))))))))))))))))))))).

Structure

-                         g     uauu    -uca                     -            u                   a         a  g             c  c    g 
 cucacucaugugagcagaaagagua cauga    uucu    aggucuuUACCAACCUUUCAU CGUUCCCuucuu gcaauaacgcuguuuugca aaccgugau gu cugagccgaugag cu uaau  
 ||||||||||||||||||||||||| |||||    ||||    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| || ||||||||||||| || |||| a
 gagugaguacacucguuuuucucau guauu    aagg    uccagaaaugguuggagagua gcaagggaagag cguuauuguggcaaaacgu uuggcguua ca gacucggcuacuc ga auua  
u                         g     --cu    uaac                     c            u                   g         c  g             a  u    a 

Annotation confidence Not enough data

Genome context

chr1: 25278944-25279207 [-]

Mature ath-miR839-5p

• Accession: MIMAT0004261
• Description: Arabidopsis thaliana ath-miR839-5p mature miRNA
• Sequence: 50 - UACCAACCUUUCAUCGUUCCC - 70
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425