miRBase entry: ath-MIR845a

Stem-loop ath-MIR845a


Accession
MI0005401
Description
Arabidopsis thaliana ath-MIR845a precursor miRNA
Gene family
MIPF0000369; MIR845_1

Literature search
3 open access papers mention ath-MIR845a
(5 sentences)

Sequence

agauaagggauugcacgauuucucaauaguuccgucgcugcguuuccaucacgucgauugcugucagagccacgccuaugaagaauuugugCGGCUCUGAUACCAAUUGAUGcuauggaaacaucgauauugccugauuccguguuuccuuuuaccuuguugu
....((((((..(((((.....(((...((...((((....((((((((..(((((((((.((((((((((.(((..((.....))..))).)))))))))).)))))))))..))))))))..))))...)).)))...))))).))))))...........

Structure
-------agau      uu     auuuc   aua  ucc    cugc        ca         c          a   cu  g 
           aaggga  gcacg     uca   gu   gucg    guuuccau  cgucgauug ugucagagcc cgc  au a
           ||||||  |||||     |||   ||   ||||    ||||||||  ||||||||| |||||||||| |||  || a
           uuuccu  ugugc     agu   cg   uagc    caaaggua  GUAGUUAAC AUAGUCUCGG gug  ua g
uguuguuccau      -u     --cuu   --c  uua    --ua        uc         C          C   uu  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 12217406-12217568 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR845a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR845a

Accession MIMAT0004268
Description Arabidopsis thaliana ath-miR845a mature miRNA
Sequence 92 - CGGCUCUGAUACCAAUUGAUG - 112
Evidence experimental
454 [1-2], cloned [2]

References

  1. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  2. PubMed ID: 17299599
    High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
    Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
    PLoS One (2007) 2:e219