miRBase entry: ath-MIR847

Stem-loop ath-MIR847


Accession
MI0005410
Description
Arabidopsis thaliana ath-MIR847 precursor miRNA
Gene family
MIPF0001171; MIR847

Literature search
1 open access papers mention ath-MIR847
(1 sentences)

Sequence

cauuuucuuguauucaaaguaucuuaaguuaagaagagaauaagauucuuacaucuugaugaagaggaaugggaagccgaaaucuaaacugaaacagaggcgucacccaauuaucaauugguaagugauaucuauguuucgaucuguaucucggccuuUCACUCCUCUUCUUCUUGAUGuaagaauuuguuauucgacacauuagauggagugaaaaaucuguuagauau
..((((((((...................))))))))((((((((((((((((((..((.((((((((.(((((.(((((.........(((((((.(((.(((((((((((...))))))...))))).))).))))))).........))))).))))).)))))))).))..))))))))))))..)))))).....(((.((((((........)))))).)))..

Structure
cauuuucuuguauucaaaguaucuuaaguuaagaaga      --            uu  u        a     a     aaucuaaac       g   c     ---      a 
                                     gaauaa  gauucuuacauc  ga gaagagga uggga gccga         ugaaaca agg gucac   ccaauu  
                                     ||||||  ||||||||||||  || |||||||| ||||| |||||         ||||||| ||| |||||   |||||| u
                                     cuuauu  uuaagaauGUAG  CU CUUCUCCU ACUuu cggcu         gcuuugu ucu uagug   gguuaa  
--uauagauugucuaaaaagugagguagauuacacag      gu            UU  U        C     c     cuaugucua       a   a     aau      c 


Annotation confidence Not enough data
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Genome context
chr1: 2165517-2165746 [+]

Database links

Mature ath-miR847

Accession MIMAT0004278
Description Arabidopsis thaliana ath-miR847 mature miRNA
Sequence 159 - UCACUCCUCUUCUUCUUGAUG - 179
Evidence experimental
454 [1]

References

  1. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425