miRBase entry: ath-MIR854c

Stem-loop ath-MIR854c


Accession
MI0005414
Description
Arabidopsis thaliana ath-MIR854c precursor miRNA
Gene family
MIPF0000361; MIR854

Literature search
5 open access papers mention ath-MIR854c
(19 sentences)

Sequence

cgGAUGAGGAUAGGGAGGAGGAGuaugauacgagcauguaucauuucagugagcacguaccuccagcgcgggagagcaagagcuugagugaagcucacagaaccaacaguaaguugcagagguggugcaagaaacaagauaggcuacuuaucaagugcuucaaagccaucacguuucugacagacaagauaagcugcuucucuucuacuacagcuauuccg
((((..((..(((((((((((((((((((((......)))))).........((((.((((((((((((......))..((((((.....))))))................))))..)))))))))).((((((..(((.((((((((...)))).......)))))))..))))))................)))))))))))).)))...))..))))

Structure
    UG  -GA   -            ---------------------------------------ugauacgagcauguaucauuucaguga    g      --    gcgggagagcaagagcuugag 
cgGA  AG   UAG GGAGGAGGAGua                                                                  gcac uaccuc  cagc                     u
||||  ||   ||| ||||||||||||                                                                  |||| ||||||  ||||                     g
gccu  uc   auc ucuucucuucgu                                                                  cgug guggag  guug                     a
    ua  gac   a            cgaauagaacagacagucuuugcacuaccgaaacuucgugaacuauucaucggauagaacaaagaa    -      ac    aaugacaaccaagacacucga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr5: 11838096-11838316 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR854c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ath-miR854c

Accession MIMAT0004282
Description Arabidopsis thaliana ath-miR854c mature miRNA
Sequence 3 - GAUGAGGAUAGGGAGGAGGAG - 23
Evidence experimental
Northern [1]

References

  1. PubMed ID: 17189346
    A family of microRNAs present in plants and animals
    "Arteaga-Vazquez M, Caballero-Perez J, Vielle-Calzada JP"
    "Plant Cell (2006) 18:3355-3369