miRBase entry: bta-let-7a-3

Stem-loop bta-let-7a-3


Accession
MI0005452
Description
Bos taurus bta-let-7a-3 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
63 open access papers mention bta-let-7a-3
(289 sentences)

Sequence

2455060 reads, 11878 reads per million, 77 experiments
gggUGAGGUAGUAGGUUGUAUAGUUuggggcucugcccugcuaugggauaaCUAUACAAUCUACUGUCUUUCcu
(((.(((((((((((((((((((((((((((...)))))).........))))))))))))))))))))).)))

Structure
   U                     ---------      u 
ggg GAGGUAGUAGGUUGUAUAGUU         uggggc  
||| |||||||||||||||||||||         |||||| c
ucC UUCUGUCAUCUAACAUAUCaa         gucccg  
   U                     uaggguauc      u 


Annotation confidence High
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Genome context
chr5: 117457806-117457879 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from bta-let-7a-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-let-7a-5p

Accession MIMAT0003844
Description Bos taurus bta-let-7a-5p mature miRNA
Sequence 4 - UGAGGUAGUAGGUUGUAUAGUU - 25
Evidence experimental
cloned [1]

Mature bta-let-7a-3p

Accession MIMAT0004330
Description Bos taurus bta-let-7a-3p mature miRNA
Sequence 52 - CUAUACAAUCUACUGUCUUUC - 72
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988