miRBase entry: bta-let-7e

Stem-loop bta-let-7e


Accession
MI0005455
Description
Bos taurus bta-let-7e precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
52 open access papers mention bta-let-7e
(209 sentences)

Sequence

76376 reads, 535 reads per million, 71 experiments
cccgggcUGAGGUAGGAGGUUGUAUAGUugaggaggacacccaaggagaucacuauacggccuccuagcuuuccccagg
((.(((..(((.((((((((((((((((.((((.(....))).......)))))))))))))))))).)))..))).))

Structure
  c   cU   G                u  -------  a g 
cc ggg  GAG UAGGAGGUUGUAUAGU ga       gg g a
|| |||  ||| |||||||||||||||| ||       || |  
gg ccc  uuc auccuccggcauauca cu       cc c c
  a   cu   g                -  agaggaa  - a 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr18: 58266748-58266826 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from bta-let-7e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-let-7e

Accession MIMAT0004333
Description Bos taurus bta-let-7e mature miRNA
Sequence 8 - UGAGGUAGGAGGUUGUAUAGU - 28
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988