miRBase entry: bta-mir-331

Stem-loop bta-mir-331


Accession
MI0005463
Description
Bos taurus bta-mir-331 precursor miRNA
Gene family
MIPF0000199; mir-331

Literature search
3 open access papers mention bta-mir-331
(12 sentences)

Sequence

6937 reads, 134 reads per million, 70 experiments
gaguuugguuuuguuuggguuuguUCUAGGUAUGGUCCCAGGgaucccagaucaaaccagGCCCCUGGGCCUAUCCUAGAAccaaccuaa
..............(((((((.((((((((.((((.(((((((...((...........)).))))))).)))))))))))).)))))))

Structure
gaguuugguuuugu       u        U    U       auc  agau 
              uuggguu guUCUAGG AUGG CCCAGGg   cc    c
              ||||||| |||||||| |||| |||||||   ||    a
              aauccaa cAAGAUCC UAUC GGGUCCC   Gg    a
--------------       c        -    C       --C  acca 


Annotation confidence High
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Genome context
chr5: 25155269-25155358 [+]

Database links

Mature bta-miR-331-3p

Accession MIMAT0004339
Description Bos taurus bta-miR-331-3p mature miRNA
Sequence 61 - GCCCCUGGGCCUAUCCUAGAA - 81
Evidence experimental
cloned [1], Illumina [2]

Mature bta-miR-331-5p

Accession MIMAT0026716
Description Bos taurus bta-miR-331-5p mature miRNA
Sequence 25 - UCUAGGUAUGGUCCCAGG - 42
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17306260
    Identification and characterization of microRNAs from the bovine adipose tissue and mammary gland
    "Gu Z, Eleswarapu S, Jiang H"
    "FEBS Lett (2007) 581:981-988

  2. PubMed ID: 23100578
    Profiling of differentially expressed microRNA and the bioinformatic target gene analyses in bovine fast- and slow-type muscles by massively parallel sequencing
    "Muroya S, Taniguchi M, Shibata M, Oe M, Ojima K, Nakajima I, Chikuni K"
    "J Anim Sci (2013) 91:90-103