Stem-loop sequence mmu-mir-190b

Accession

MI0005478 (change log)

Symbol

MGI:Mir190b

Description

Mus musculus miR-190b stem-loop

Gene family

MIPF0000076; mir-190

Literature search

22 open access papers mention mmu-mir-190b
(87 sentences)

Stem-loop

   --    u     u  -             g     -  aaa 
5'   ugcu cugug ga uauguuugauauu gguug uu   u
     |||| ||||| || ||||||||||||| ||||| ||    
3'   auga gacac cu auacgaacuguaa ucaac aa   u
   ga    c     u  c             g     c  gua 

Deep sequencing

2805 reads, 1.02 reads per million, 98 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr3: 90070020-90070099 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir190b
• MGI:Mir190b
• RNAcentral:URS000075C464_10090
• miRBase Tracker:MI0005478

Mature sequence mmu-miR-190b-5p

• Accession: MIMAT0004852
• Previous IDs: mmu-miR-190b
• Sequence: 11 - ugauauguuugauauuggguug - 32
• Deep sequencing: 2493 reads, 97 experiments
• Evidence: experimental; cloned [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS00000FFE5F_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-190b-5p
  • miRDB:mmu-miR-190b-5p
  • microrna.org:mmu-miR-190b-5p

Mature sequence mmu-miR-190b-3p

• Accession: MIMAT0017267
• Previous IDs: mmu-miR-190b*
• Sequence: 48 - acugaaugucaagcauacucuca - 70
• Deep sequencing: 310 reads, 62 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS00002529A7_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-190b-3p
  • miRDB:mmu-miR-190b-3p

References

1. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).