miRBase entry: mmu-mir-18b

Stem-loop mmu-mir-18b


Accession
MI0005483
Symbol
MGI: Mir18b
Description
Mus musculus mmu-mir-18b precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
60 open access papers mention mmu-mir-18b
(145 sentences)

Sequence

7799 reads, 141 reads per million, 85 experiments
ucucuuguguUAAGGUGCAUCUAGUGCUGUUAGugaagcagcuuacaaucUACUGCCCUAAAUGCCCCUUCUcgcacaggcua
...(((((((.((((.((((.(((.(((((.(((......))).))).......)).))).)))).))))...)))))))...

Structure
ucu       --U    U    C   U  -------   U   ga 
   cuugugu   AAGG GCAU UAG GC       UGU AGu  a
   |||||||   |||| |||| ||| ||       ||| |||   
   ggacacg   UUCC CGUA AUC CG       aca ucg  g
auc       cUC    C    A   C  UCAUcua   u   ac 


Annotation confidence High
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Genome context
chrX: 52742331-52742413 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from mmu-mir-18b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-18b-5p

Accession MIMAT0004858
Description Mus musculus mmu-miR-18b-5p mature miRNA
Sequence 11 - UAAGGUGCAUCUAGUGCUGUUAG - 33
Evidence experimental
cloned [1], Illumina [2]
Database links
Predicted targets

Mature mmu-miR-18b-3p

Accession MIMAT0017270
Description Mus musculus mmu-miR-18b-3p mature miRNA
Sequence 51 - UACUGCCCUAAAUGCCCCUUCU - 72
Evidence experimental
Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009