Stem-loop mmu-mir-193b

Accession

MI0005484

Symbol

MGI: Mir193b

Description

Mus musculus mmu-mir-193b precursor miRNA

Gene family

MIPF0000082; mir-193

Literature search

67 open access papers mention mmu-mir-193b
(318 sentences)

Sequence

12269 reads, 237 reads per million, 91 experiments

ggcccagaauCGGGGUUUUGAGGGCGAGAUGAguuuguguuuuauccAACUGGCCCACAAAGUCCCGCUuuugggguca
(((((((((.((((((((((.((((.((.((.((.........)).)).)).)))).)))))))))).)))).))))).

Structure

-     -    u          A    G  A  A  uug 
 ggccc agaa CGGGGUUUUG GGGC AG UG gu   u
 ||||| |||| |||||||||| |||| || || ||   g
 cuggg uuuU GCCCUGAAAC CCCG UC Ac ua   u
a     g    C          A    G  A  c  uuu 

Annotation confidence High

Genome context

chr16: 13449523-13449601 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mmu-mir-193b

Mature mmu-miR-193b-5p

• Accession: MIMAT0017271
• Description: Mus musculus mmu-miR-193b-5p mature miRNA
• Sequence: 11 - CGGGGUUUUGAGGGCGAGAUGA - 32
• Evidence: experimental ; Illumina [3]

Mature mmu-miR-193b-3p

• Accession: MIMAT0004859
• Description: Mus musculus mmu-miR-193b-3p mature miRNA
• Sequence: 48 - AACUGGCCCACAAAGUCCCGCU - 69
• Evidence: experimental ; cloned [1], Illumina [2-3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009