miRBase entry: mmu-mir-297c

Stem-loop mmu-mir-297c


Accession
MI0005492
Symbol
MGI: Mir297c
Description
Mus musculus mmu-mir-297c precursor miRNA
Gene family
MIPF0000204; mir-297

Literature search
9 open access papers mention mmu-mir-297c
(10 sentences)

Sequence

6951 reads, 160 reads per million, 97 experiments
cuguguguauAUGUAUGUGUGCAUGUACAUGUguguauaugaauauacaUAUACAUACACACAUACCCAUAcaaacaugcauacaaacacacaaaaau
.(((((((...((((((((((..((((..((((((((((((......))))))))))))..........))))..)))))))))).))))))).....

Structure
----c       auA          CA    --------CA            aa 
     ugugugu   UGUAUGUGUG  UGUA          UGUguguauaug  u
     |||||||   ||||||||||  ||||          ||||||||||||   
     acacaca   acauacguac  acAU          ACAUACAUAUac  a
uaaaa       --a          aa    ACCCAUACAC            au 


Annotation confidence High
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Genome context
chr2: 10509016-10509113 [+]
Clustered miRNAs
23 other miRNAs are < 10 kb from mmu-mir-297c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-297c-5p

Accession MIMAT0004865
Description Mus musculus mmu-miR-297c-5p mature miRNA
Sequence 11 - AUGUAUGUGUGCAUGUACAUGU - 32
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

Mature mmu-miR-297c-3p

Accession MIMAT0004866
Description Mus musculus mmu-miR-297c-3p mature miRNA
Sequence 50 - UAUACAUACACACAUACCCAUA - 71
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009