miRBase entry: mmu-mir-465c-2

Stem-loop mmu-mir-465c-2


Accession
MI0005501
Symbol
MGI: Mir465c-2
Description
Mus musculus mmu-mir-465c-2 precursor miRNA
Gene family
MIPF0000384; mir-465

Literature search
8 open access papers mention mmu-mir-465c-2
(33 sentences)

Sequence

229588 reads, 4626 reads per million, 58 experiments
ugcaaugcccUAUUUAGAAUGGCGCUGAUCUGaugaauaaaaaaaaaauGAUCAGGGCCUUUCUAAGUAGAguaaggcuua
.((..(((.((((((((((.(((.((((((...................)))))).))).)))))))))).)))..))...

Structure
--u  aa   c          U   G      UGaugaau 
   gc  ugc cUAUUUAGAA GGC CUGAUC        a
   ||  ||| |||||||||| ||| ||||||        a
   cg  aug GAUGAAUCUU CCG GACUAG        a
auu  ga   A          U   G      uaaaaaaa 


Annotation confidence High
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Genome context
chrX: 66832517-66832597 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from mmu-mir-465c-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-465c-5p

Accession MIMAT0004873
Description Mus musculus mmu-miR-465c-5p mature miRNA
Sequence 11 - UAUUUAGAAUGGCGCUGAUCUG - 32
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

Mature mmu-miR-465c-3p

Accession MIMAT0004874
Description Mus musculus mmu-miR-465c-3p mature miRNA
Sequence 50 - GAUCAGGGCCUUUCUAAGUAGA - 71
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009