miRBase entry: mmu-mir-466c-1

Stem-loop mmu-mir-466c-1


Accession
MI0005505
Symbol
MGI: Mir466c-1
Description
Mus musculus mmu-mir-466c-1 precursor miRNA
Gene family
MIPF0000208; mir-466

Literature search
27 open access papers mention mmu-mir-466c-1
(63 sentences)

Sequence

21133 reads, 354 reads per million, 100 experiments
guauauguguUGAUGUGUGUGUGCAUGUACAUAUgugaauaugauauacauAUACAUACACGCACACAUAAGAcacauaugagc
.((((((((((.(((((((((((.(((((..((((((.........))))))))))).)))))))))))..))))))))))...

Structure
--g          -G           C     CA      aau 
   uauauguguU  AUGUGUGUGUG AUGUA  UAUgug   a
   ||||||||||  ||||||||||| |||||  ||||||   u
   guauacacAG  UACACACGCAC UACAU  Auacau   g
cga          AA           A     --      aua 


Annotation confidence Not enough data
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Genome context
chr2: 10481534-10481617 [+]
Clustered miRNAs
29 other miRNAs are < 10 kb from mmu-mir-466c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-466c-5p

Accession MIMAT0004877
Description Mus musculus mmu-miR-466c-5p mature miRNA
Sequence 11 - UGAUGUGUGUGUGCAUGUACAUAU - 34
Evidence experimental
Illumina [1]

Mature mmu-miR-466c-3p

Accession MIMAT0004878
Description Mus musculus mmu-miR-466c-3p mature miRNA
Sequence 52 - AUACAUACACGCACACAUAAGA - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009