Stem-loop mmu-mir-466f-1

Accession

MI0005507

Symbol

MGI: Mir466f-1

Description

Mus musculus mmu-mir-466f-1 precursor miRNA

Gene family

MIPF0000316; mir-467

Literature search

28 open access papers mention mmu-mir-466f-1
(69 sentences)

Sequence

5643 reads, 232 reads per million, 102 experiments

cauguguguuUACGUGUGUGUGCAUGUGCAUGuguguauaugaauauacauacaCAUACACACACACAUACACACacaugcaacacacacauau
(((((((((.((.(((((((((.(((((.((((((((......)))))))).))))).))))))))).)).)))))))))..............

Structure

--------------         u  C         C     C        au 
              caugugugu UA GUGUGUGUG AUGUG AUGugugu  a
              ||||||||| || ||||||||| ||||| ||||||||   
              guacaCACA AU CACACACAC UACac uacauaua  u
uauacacacacaac         C  A         A     a        ag 

Annotation confidence Not enough data

Comments

Landgraf et al. identify several offset sequences which map to the 3' arm of the miR-466f hairpin precursors [1]. One sequence consistent with all three putative hairpin loci is shown here.

Genome context

chr2: 10466944-10467037 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from mmu-mir-466f-1

Mature mmu-miR-466f-5p

• Accession: MIMAT0004881
• Description: Mus musculus mmu-miR-466f-5p mature miRNA
• Sequence: 11 - UACGUGUGUGUGCAUGUGCAUG - 32
• Evidence: experimental ; cloned [1], Illumina [2]

Mature mmu-miR-466f-3p

• Accession: MIMAT0004882
• Description: Mus musculus mmu-miR-466f-3p mature miRNA
• Sequence: 55 - CAUACACACACACAUACACAC - 75
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009