miRBase entry: mmu-mir-467c

Stem-loop mmu-mir-467c


Accession
MI0005512
Symbol
MGI: Mir467c
Description
Mus musculus mmu-mir-467c precursor miRNA
Gene family
MIPF0000316; mir-467

Literature search
19 open access papers mention mmu-mir-467c
(54 sentences)

Sequence

21980 reads, 398 reads per million, 101 experiments
ccuuugugcaUAAGUGCGUGCAUGUAUAUGUGuguauauuuuaugcAUAUACAUACACACACCUAUACacacaugcacacagacaugcgagaauggc
.((.(((((((..(((.(((.(((((((((((((.......))))))))))))).))).)))..........))))))).)).(((......)))..

Structure
--------------c  u       --------AA   C   C             ua 
               cu ugugcaU          GUG GUG AUGUAUAUGUGug  u
               || |||||||          ||| ||| |||||||||||||  a
               ga acacgua          CAC CAC UACAUAUAcguau  u
cgguaagagcguaca  c       cacaCAUAUC   A   A             uu 


Annotation confidence High
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Genome context
chr2: 10473931-10474027 [+]
Clustered miRNAs
27 other miRNAs are < 10 kb from mmu-mir-467c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-467c-5p

Accession MIMAT0004885
Description Mus musculus mmu-miR-467c-5p mature miRNA
Sequence 11 - UAAGUGCGUGCAUGUAUAUGUG - 32
Evidence experimental
cloned [1], Illumina [2-3]
Database links
Predicted targets

Mature mmu-miR-467c-3p

Accession MIMAT0017275
Description Mus musculus mmu-miR-467c-3p mature miRNA
Sequence 47 - AUAUACAUACACACACCUAUAC - 68
Evidence experimental
Illumina [3]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009