miRBase entry: mmu-mir-449b

Stem-loop mmu-mir-449b


Accession
MI0005547
Symbol
MGI: Mir449b
Description
Mus musculus mmu-mir-449b precursor miRNA
Gene family
MIPF0000133; mir-449

Literature search
48 open access papers mention mmu-mir-449b
(301 sentences)

Sequence

30 reads, 19 reads per million, 18 experiments
agacucggguAGGCAGUGUUGUUAGCUGGCugcguugggucaggccagcagccacagcuacccugccacuuccuucuggc
(((...((((.(((((.((.(((.(.(((((((..(((......)))))))))))))).)).)))))))))...)))...

Structure
---   cuc    A     U  U   A C       gu   gu 
   aga   gggu GGCAG GU GUU G UGGCugc  ugg  c
   |||   |||| ||||| || ||| | |||||||  |||   
   ucu   uuca ccguc ca cga c accgacg  acc  a
cgg   ucc    -     c  u   - -       --   gg 


Annotation confidence Not enough data
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Genome context
chr13: 113037419-113037498 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from mmu-mir-449b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-449b

Accession MIMAT0005447
Description Mus musculus mmu-miR-449b mature miRNA
Sequence 11 - AGGCAGUGUUGUUAGCUGGC - 30
Evidence not_experimental

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414