Stem-loop sequence mtr-MIR156c

Accession

MI0005584 (change log)

Description

Medicago truncatula miR156c stem-loop

Gene family

MIPF0000008; MIR156

Literature search

10 open access papers mention mtr-MIR156c
(77 sentences)

Stem-loop

   --  u         -              c     guu   uu   c  uu 
5'   gg ggugacaga agagagugagcaca auggu   uuc  gca ga  a
     || ||||||||| |||||||||||||| |||||   |||  ||| ||  u
3'   cc ccacugucu ucucucauucgugu uaucg   aag  cgu cu  g
   ca  -         a              a     ---   uu   c  uu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr3: 36762577-36762674 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0005584

Mature sequence mtr-miR156c-5p

• Accession: MIMAT0011070
• Sequence: 6 - ugacagaagagagugagcac - 25
• Evidence: experimental; Illumina [2]

Mature sequence mtr-miR156c-3p

• Accession: MIMAT0026724
• Sequence: 73 - ugcuuacucucuaucugucacc - 94
• Evidence: experimental; Illumina [2]

References

1. " Bonnet E Unpublished (2007).
2. PMID:23572382 "microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula" Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N Planta. 238:91-105(2013).