Stem-loop sequence mtr-MIR399f

Accession

MI0005587 (change log)

Description

Medicago truncatula miR399f stem-loop

Gene family

MIPF0000015; MIR399

Literature search

9 open access papers mention mtr-MIR399f
(22 sentences)

Stem-loop

   --uuaca   ug   u    a         a  uagu     ---u    ua     
5'        ggg  agu cucc uuggcaggu gc    cacua    auga  ugca 
          |||  ||| |||| ||||||||| ||    |||||    ||||  ||| u
3'        ccc  uua gagg aaccgucua cg    gugau    uacu  acgu 
   uuagcga   gu   -    a         a  ---u     ucuc    ua     

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (JCVI_Mt3.5.2)	Overlapping transcripts
chr8: 23166508-23166611 [-]	intergenic
chr8: 23986801-23986904 [+]	intergenic
chr8: 24153821-24153924 [+]	intergenic
chr8: 24222878-24222981 [+]	intergenic

Clustered miRNAs

< 10kb from mtr-MIR399f

• mtr-MIR399g: chr8: 24230599-24230702 [+]
• mtr-MIR399f: chr8: 24222878-24222981 [+]
• mtr-MIR399e: chr8: 24214214-24214347 [+]
• mtr-MIR399g: chr8: 24161515-24161618 [+]
• mtr-MIR399f: chr8: 24153821-24153924 [+]
• mtr-MIR399e: chr8: 24145178-24145311 [+]
• mtr-MIR399g: chr8: 23994507-23994610 [+]
• mtr-MIR399f: chr8: 23986801-23986904 [+]
• mtr-MIR399e: chr8: 23978156-23978289 [+]
• mtr-MIR399e: chr8: 23175117-23175250 [-]
• mtr-MIR399f: chr8: 23166508-23166611 [-]
• mtr-MIR399a: chr8: 23163782-23163915 [-]
• mtr-MIR399g: chr8: 23158805-23158908 [-]

Database links

• miRBase Tracker:MI0005587

Mature sequence mtr-miR399f

• Accession: MIMAT0011073
• Sequence: 79 - ugccaaaggagauuugcccag - 99
• Evidence: by similarity; MI0001020

References

1. " Bonnet E Unpublished (2007).