Stem-loop sequence mtr-MIR399h

Accession

MI0005589 (change log)

Description

Medicago truncatula miR399h stem-loop

Gene family

MIPF0000015; MIR399

Literature search

9 open access papers mention mtr-MIR399h
(25 sentences)

Stem-loop

       a   a          a        -ac      gaaa  uug 
5' aaug uag gcaaaucucu uuggcaga   gaagua    gc   g
   |||| ||| |||||||||| ||||||||   ||||||    ||    
3' uuac guc cguuuagagg aaccguuu   cuucgu    cg   a
       c   c          a        ggu      ---a  uac 

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (JCVI_Mt3.5.2)	Overlapping transcripts
chr8: 23153129-23153218 [+]	intergenic
chr8: 24000209-24000298 [-]	intergenic
chr8: 24050903-24050992 [+]	intergenic
chr8: 24167198-24167287 [-]	intergenic

Clustered miRNAs

< 10kb from mtr-MIR399h

• mtr-MIR399h: chr8: 23153129-23153218 [+]
• mtr-MIR399g: chr8: 23158805-23158908 [-]
• mtr-MIR399g: chr8: 23994507-23994610 [+]
• mtr-MIR399h: chr8: 24000209-24000298 [-]
• mtr-MIR399h: chr8: 24050903-24050992 [+]
• mtr-MIR399g: chr8: 24161515-24161618 [+]
• mtr-MIR399h: chr8: 24167198-24167287 [-]
• mtr-MIR399g: chr8: 24230599-24230702 [+]

Database links

• miRBase Tracker:MI0005589

Mature sequence mtr-miR399h

• Accession: MIMAT0011075
• Sequence: 65 - ugccaaaggagauuugcccug - 85
• Evidence: by similarity; MI0001020

References

1. " Bonnet E Unpublished (2007).