Stem-loop sequence mtr-MIR166e

Accession

MI0005594 (change log)

Description

Medicago truncatula miR166e stem-loop

Gene family

MIPF0000004; MIR166

Literature search

9 open access papers mention mtr-MIR166e
(40 sentences)

Stem-loop

   u            uu g    cu         uc     -c    agg   uu 
5'  uugaggggaaug  g cugg  cgaggcuuu  aguuu  acaa   aag  c
    ||||||||||||  | ||||  |||||||||  |||||  ||||   |||   
3'  aacuccccuuac  c gacc  gcuucggaa  ucaag  uguu   uuc  a
   a            uu g    ag         ua     ua    -aa   ug 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr8: 27465367-27465472 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0005594

Mature sequence mtr-miR166e-5p

• Accession: MIMAT0026726
• Sequence: 8 - ggaauguuggcuggcucgagg - 28
• Evidence: experimental; Illumina [2]

Mature sequence mtr-miR166e-3p

• Accession: MIMAT0011080
• Sequence: 81 - ucggaccaggcuucauucccc - 101
• Evidence: experimental; Illumina [2]

References

1. " Bonnet E Unpublished (2007).
2. PMID:23572382 "microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula" Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N Planta. 238:91-105(2013).